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--- biological-databases [2019/03/13 19:33] – aorth
+++ biological-databases [2019/03/13 19:42] – aorth
@@ Line 5: / Line 5: @@
 We endeavor to keep this list updated as the One True List™.
-^Name        ^Version number   ^Last updated                ^Where it resides              ^How to use   ^
+^Name        ^Version number   ^Last updated¹                ^Where it resides              ^How to use   ^
-|NCBI nr/nt nucleotide collection|N/A|24 Nov 2018|''/export/data/bio/ncbi/blast/db''|use ''BLASTDB=/export/data/bio/ncbi/blast/db'' and ''blastn ... -db nt'' in your Bash script|
+|NCBI nr/nt nucleotide collection|N/A|2018-11-24|''/export/data/bio/ncbi/blast/db''|use ''BLASTDB=/export/data/bio/ncbi/blast/db'' and ''blastn ... -db nt'' in your Bash script|
-|NCBI nr/nt protein collection|N/A|16 Aug 2018|''/export/data/bio/ncbi/blast/db''|use ''BLASTDB=/export/data/bio/ncbi/blast/db'' and ''blastp ... -db nr'' in your Bash script|
+|NCBI nr/nt protein collection|N/A|2018-08-16|''/export/data/bio/ncbi/blast/db''|use ''BLASTDB=/export/data/bio/ncbi/blast/db'' and ''blastp ... -db nr'' in your Bash script|
 |UniProt's UniProtKB/Swiss-Prot (manually curated, most reliable)|N/A|?|''/export/data/bio/uniprot/blast/db''|use ''BLASTDB=/export/data/bio/uniprot/blast/db'' in your Bash script|
 |UniProt's UniProtKB/TrEMBL (automated curation)|N/A|?|''/export/data/bio/uniprot/blast/db''|use ''BLASTDB=/export/data/bio/uniprot/blast/db'' in your Bash script|
 |UniProt's UniRef100|N/A|?|''/export/data/bio/uniprot/blast/db''|use ''BLASTDB=/export/data/bio/uniprot/blast/db'' in your Bash script|
+¹ Use the following to determine the date of a BLAST database: ''/export/apps/blast/2.7.1+/bin/blastdbcmd -info -db nt | grep Date''