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--- biological-databases [2019/03/12 10:12] – jean-baka
+++ biological-databases [2019/03/12 10:14] – jean-baka
@@ Line 8: / Line 8: @@
 ^Name        ^Version number   ^Last updated                ^Where it resides              ^How to use   ^
 |NCBI nr/nt nucleotide collection|N/A|24 Nov 2018|''/export/data/bio/ncbi/blast/db''|use ''BLASTDB=/export/data/bio/ncbi/blast/db'' in your Bash script|
-|NCBI nr/nt protein collection|N/A|16 Aug 2018|''/export/data/bio/ncbi/blast/db''|use ''BLASTDB=/export/data/bio/ncbi/blast/db'' in your Bash script|
+|NCBI nr/nt protein collection|N/A|16 Aug 2018|''/export/data/bio/ncbi/blast/db''|use ''BLASTDB=/export/data/bio/ncbi/blast/db'' and ''blastn ... -db nt'' in your Bash script|
-|UniProt's UniProtKB/Swiss-Prot (manually curated, most reliable)|N/A|?|''/export/data/bio/uniprot/blast/db''|use ''BLASTDB=/export/data/bio/uniprot/blast/db'' in your Bash script|
+|UniProt's UniProtKB/Swiss-Prot (manually curated, most reliable)|N/A|?|''/export/data/bio/uniprot/blast/db''|use ''BLASTDB=/export/data/bio/uniprot/blast/db'' and ''blastp ... -db nr'' in your Bash script|
 |UniProt's UniProtKB/TrEMBL (automated curation)|N/A|?|''/export/data/bio/uniprot/blast/db''|use ''BLASTDB=/export/data/bio/uniprot/blast/db'' in your Bash script|
 |UniProt's UniRef100|N/A|?|''/export/data/bio/uniprot/blast/db''|use ''BLASTDB=/export/data/bio/uniprot/blast/db'' in your Bash script|