Differences

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--- biological-databases [2019/03/12 09:53] – jean-baka
+++ biological-databases [2019/03/12 10:12] – jean-baka
@@ Line 6: / Line 6: @@
-^Name        ^Version number   ^Last updated                ^Where it resides              ^
+^Name        ^Version number   ^Last updated                ^Where it resides              ^How to use   ^
-|NCBI nr/nt collection|2.1.4|end Nov 2018|''/export/data/bio/ncbi/blast/db''|
+|NCBI nr/nt nucleotide collection|N/A|24 Nov 2018|''/export/data/bio/ncbi/blast/db''|use ''BLASTDB=/export/data/bio/ncbi/blast/db'' in your Bash script|
+|NCBI nr/nt protein collection|N/A|16 Aug 2018|''/export/data/bio/ncbi/blast/db''|use ''BLASTDB=/export/data/bio/ncbi/blast/db'' in your Bash script|
+|UniProt's UniProtKB/Swiss-Prot (manually curated, most reliable)|N/A|?|''/export/data/bio/uniprot/blast/db''|use ''BLASTDB=/export/data/bio/uniprot/blast/db'' in your Bash script|
+|UniProt's UniProtKB/TrEMBL (automated curation)|N/A|?|''/export/data/bio/uniprot/blast/db''|use ''BLASTDB=/export/data/bio/uniprot/blast/db'' in your Bash script|
+|UniProt's UniRef100|N/A|?|''/export/data/bio/uniprot/blast/db''|use ''BLASTDB=/export/data/bio/uniprot/blast/db'' in your Bash script|