Differences

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--- bio:tools:codonopttable [2009/12/17 09:48] – 172.26.15.75
+++ bio:tools:codonopttable [2010/02/15 10:16] – 172.26.0.166
@@ Line 66: / Line 66: @@
 <code>
 $seqobj->generate_graph($myCodons,"myoutput.gif");</code>
 ====Creating a gui for CodonOptTable====
+Here is a python script that provides a Graphical User Interface:
+You need to have wxpython installed on your system.
+<file>
+#!/usr/bin/python
+import wx
+import os
+import random
+class testgui(wx.Frame):
+    def __init__(self, parent, id, title):
+        wx.Frame.__init__(self, parent, id, title, size=(600,300))
+        # Menu stuff
+        menubar =wx.MenuBar()
+        menufile =wx.Menu()
+        menuhelp =wx.Menu()
+        self.SetMenuBar(menubar)
+        menubar.Append(menufile, '&File')
+        menubar.Append(menuhelp, '&Help')
+        exitmenu =menufile.Append(-1, 'Quit', 'Exit Application')
+        about =menuhelp.Append(-1, 'About', 'About us')
+        #panel creation and sizer
+        panel =wx.Panel(self, -1)
+        hbsizer =wx.BoxSizer(wx.VERTICAL)
+        self.orig_text =wx.TextCtrl(panel,-1,size=(250,150),style=wx.TE_MULTILINE)
+       # self.orig_text =wx.TextCtrl(panel,-1)
+#Objects
+        self.orig_label =wx.StaticText(panel,-1, 'Paste Your Sequence here:')
+	ok_button =wx.Button(panel,-1,'Run CodonOptTable')
+	cancel_button =wx.Button(panel,-1,'Clear')
+	exit_button=wx.Button(panel,-1,'Exit')
+	disp =wx.StaticText(panel,-1,'')
+	vsizer1 =wx.BoxSizer(wx.HORIZONTAL)
+	vsizer4 =wx.BoxSizer(wx.HORIZONTAL)
+	vsizer5 =wx.BoxSizer(wx.HORIZONTAL)
+	vsizer6 =wx.BoxSizer(wx.HORIZONTAL)
+	vsizer2 =wx.BoxSizer(wx.HORIZONTAL)
+	vsizer1.Add(self.orig_label,1,wx.CENTRE,10)
+	vsizer2.Add(self.orig_text,1,wx.CENTRE,10)
+	vsizer5.Add(ok_button,1,wx.RIGHT,1)
+	vsizer5.Add(cancel_button,1,wx.RIGHT,1)
+	vsizer5.Add(exit_button,1,wx.RIGHT,1)
+	vsizer6.Add(disp,1,wx.CENTER,1)
+	hbsizer.Add(vsizer1,0,wx.CENTER|wx.ALL,1)
+#	hbsizer.Add(self.orig_text,0, wx.CENTER|wx.ALL,1)
+	hbsizer.Add(vsizer2,0, wx.CENTER|wx.ALL,1)
+	hbsizer.Add(vsizer4,0, wx.CENTER|wx.ALL,1)
+	hbsizer.Add(vsizer5,0,wx.ALIGN_RIGHT|wx.RIGHT,1)
+	hbsizer.Add(vsizer6,0,wx.CENTER,1)
+	#events
+	self.Bind(wx.EVT_BUTTON,self.executa,ok_button)
+	self.Bind(wx.EVT_MENU, self.soja, exitmenu)
+	self.Bind(wx.EVT_BUTTON,self.clear,cancel_button)
+	self.Bind(wx.EVT_BUTTON,self.soja,exit_button)
+	#panel.CreateStatusBar()
+	panel.SetSizer(hbsizer)
+	self.Centre()
+        self.Show(True)
+    def clear(self,event=None):
+	self.orig_text.SetValue('')
+    def soja(self, event=None):
+        self.Close(True)
+    def executa(self,event=None):
+	recordid=random.randint(20,10055)
+	originator=self.orig_text.GetValue()
+	os.system('perl /home/obiero/codonopt/codonOpt-test.pl %s' %originator)
+	wx.MessageBox('DONE! check the output in you folder', 'CodonOptTable Info')
+app =wx.App()
+testgui(None, -1, 'CodonOptTable GUI')
+app.MainLoop()
+</file>