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.IX Title "LLNL::LAVA::OligoEnumerator 3"
.TH LLNL::LAVA::OligoEnumerator 3 "2011-06-27" "perl v5.8.8" "User Contributed Perl Documentation"
.SH "NAME"
LLNL::LAVA::OligoEnumerator \- Abstract base class for different methods of
creating sets of oligos based on a BioPerl sequence or MSA
.SH "SYNOPSIS"
.IX Header "SYNOPSIS"
do not use OligoEnumerator directly, use a concrete sub\-class.
.SH "EXAMPLES"
.IX Header "EXAMPLES"
See synopsis.
.SH "DESCRIPTION"
.IX Header "DESCRIPTION"
OligoEnumerator is an abstract base class which defines the interface for
concrete OligoEnumerator implementations (such as Primer3Conserved).
.SH "APPENDIX"
.IX Header "APPENDIX"
The following documentation describes the functions in this package
.Sh "new"
.IX Subsection "new"
.Vb 6
\& Usage     : $oligoEnumerator = LLNL::LAVA::OligoEnumerator->new();
\& Function  : Creates a new LLNL::LAVA::OligoEnumerator, only sub-classes 
\&             should use this
\& Arguments : <n/a>
\& Example   : See Usage
\& Returns   : A new LLNL::LAVA::OligoEnumerator
.Ve
.Sh "getOligos"
.IX Subsection "getOligos"
.Vb 6
\& Usage     : Do not use this directly 
\& Function  : Sub-class implementation must return a set of LLNL::LAVA::Oligo
\&             objects.
\& Arguments : <n/a> 
\& Example   : See Usage
\& Returns   : Array of L<LLNL::LAVA::Oligo> - the oligos found for the input
.Ve
.SH "AUTHOR"
.IX Header "AUTHOR"
Clinton Torres (clinton.torres@llnl.gov)
.SH "SEE ALSO"
.IX Header "SEE ALSO"