Differences

This shows you the differences between two versions of the page.

--- beast-software [2016/11/14 12:02] – joguya
+++ beast-software [2019/11/11 15:46] (current) – aorth
@@ Line 1: / Line 1: @@
 ====== BEAST ======
 BEAST is a cross-platform program for Bayesian MCMC analysis of molecular sequences.
 ===== Information =====
-  * Version: 1.8.2
+  * Version: 1.10.4
   * Added: August, 2014
-  * Updated: November, 2016
+  * Updated: September, 2019
-  * Link: http://beast.bio.ed.ac.uk/
+  * Link: http://beast.community/
 ===== Usage =====
@@ Line 15: / Line 14: @@
 <code>$ module avail beast</code>
-Load beast
+Load one version into your environment and run it:
-<code>$ module load beast/1.8.3</code>
+<code>$ module load beast/1.10.4
+$ beast -h</code>
+Note: Please use the ''-threads'' option to limit the number of threads launched by BEAST to be the same amount as in your SLURM sbatch allocation. See [[https://beast.community/performance|the documentation]] for more information.
 ===== Installation ======
@@ Line 23: / Line 24: @@
 <code>$ cd /tmp
-$ wget https://github.com/beast-dev/beast-mcmc/releases/download/v1.8.3/BEASTv1.8.3.tgz
+$ wget https://github.com/beast-dev/beast-mcmc/releases/download/v1.10.4/BEASTv1.10.4.tgz
-$ tar -xvf BEASTv1.8.3.tgz
+$ tar xf BEASTv1.10.4.tgz
-$ cd BEASTv1.8.3
+$ sudo cp -r BEASTv1.10.4 /export/apps/beast/1.10.4</code>
-$ sudo mkdir -p /export/apps/beast/1.8.3
-$ sudo cp -r . /export/apps/beast/1.8.3/
-</code>