Differences

This shows you the differences between two versions of the page.

--- beast-software [2014/08/28 06:55] – created aorth
+++ beast-software [2019/11/11 15:46] (current) – aorth
@@ Line 4: / Line 4: @@
 ===== Information =====
-  * Version: 1.8.0
+  * Version: 1.10.4
   * Added: August, 2014
-  * Link: http://beast.bio.ed.ac.uk/
+  * Updated: September, 2019
+  * Link: http://beast.community/
 ===== Usage =====
-=== See versions of beast which are available ===
+See which versions of beast are available:
-<code>module avail beast</code>
+<code>$ module avail beast</code>
+Load one version into your environment and run it:
+<code>$ module load beast/1.10.4
+$ beast -h</code>
+Note: Please use the ''-threads'' option to limit the number of threads launched by BEAST to be the same amount as in your SLURM sbatch allocation. See [[https://beast.community/performance|the documentation]] for more information.
 ===== Installation ======
 Notes from the sysadmin during installation:
-<code>wget http://beast-mcmc.googlecode.com/files/BEASTv1.8.0.tgz
+<code>$ cd /tmp
-tar zxf BEASTv1.8.0.tgz
+$ wget https://github.com/beast-dev/beast-mcmc/releases/download/v1.10.4/BEASTv1.10.4.tgz
-cd BEASTv1.8.0
+$ tar xf BEASTv1.10.4.tgz
-sudo mkdir -p /export/apps/beast/1.8.0
+$ sudo cp -r BEASTv1.10.4 /export/apps/beast/1.10.4</code>
-sudo cp -rv * /export/apps/beast/1.8.0/</code>