beagle-software
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beagle-software [2016/11/14 11:59] – joguya | beagle-software [2021/06/21 07:52] (current) – aorth | ||
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====== Beagle ====== | ====== Beagle ====== | ||
- | |||
BEAGLE is a high-performance library that can perform the core calculations at the heart of most Bayesian and Maximum Likelihood phylogenetics packages such as BEAST. | BEAGLE is a high-performance library that can perform the core calculations at the heart of most Bayesian and Maximum Likelihood phylogenetics packages such as BEAST. | ||
===== Information ===== | ===== Information ===== | ||
- | * Latest Version: | + | * Latest Version: |
* Added: August, 2015 | * Added: August, 2015 | ||
- | * Updated: | + | * Updated: |
* Link: https:// | * Link: https:// | ||
| | ||
Line 13: | Line 12: | ||
See which versions of beagle are available: | See which versions of beagle are available: | ||
- | < | + | < |
- | </ | + | |
- | Load beagle | + | Load one version into your environment: |
- | < | + | < |
- | ===== Installation ====== | + | Beagle is not useful by itself, but you can use it to speed up [[https:// |
+ | ===== Installation ====== | ||
Notes from the sysadmin during installation: | Notes from the sysadmin during installation: | ||
- | < | + | < |
- | $ cd /tmp | + | $ cd beagle-lib |
- | $ git clone --depth=1 | + | $ sed -i ' |
- | $ cd beagle-lib/ | + | $ scl enable devtoolset-7 bash |
- | $ git checkout beagle_release_2_1_2 | + | $ sudo yum install libtool |
- | $ scl enable devtoolset-2 bash | + | $ ./ |
- | $ module load java/1.8 | + | $ ./configure --prefix=/ |
- | $ ./ | + | $ sudo mkdir -p / |
- | $ sudo mkdir / | + | $ sudo chown aorth / |
- | $ sudo chown joguya: | + | |
- | $ ./configure --prefix=/ | + | |
$ make install | $ make install | ||
- | $ sudo chown -R root:root / | + | $ sudo chown -R root:root / |
- | </ | + | |
+ | **Note (2021-06-21): |
beagle-software.1479124786.txt.gz · Last modified: 2016/11/14 11:59 by joguya