ILRI Research Computing

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====== Beagle ======
BEAGLE is a high-performance library that can perform the core calculations at the heart of most Bayesian and Maximum Likelihood phylogenetics packages such as BEAST.

===== Information =====

  * Latest Version: 3.1.2
  * Added: August, 2015
  * Updated: June, 2021
  * Link: https://github.com/beagle-dev/beagle-lib
  
===== Usage =====

See which versions of beagle are available:
<code>$ module avail beagle</code>

Load one version into your environment:
<code>$ module load beagle/3.1.2</code>

Beagle is not useful by itself, but you can use it to speed up [[https://hpc.ilri.cgiar.org/beast-software|BEAST]] and [[https://hpc.ilri.cgiar.org/beast2-software|BEAST2]].

===== Installation ======
Notes from the sysadmin during installation:

<code>$ git clone https://github.com/beagle-dev/beagle-lib.git -b v3.1.2
$ cd beagle-lib
$ sed -i 's/compute_30/compute_70/' configure.ac
$ scl enable devtoolset-7 bash
$ sudo yum install libtool
$ ./autogen.sh
$ ./configure --prefix=/export/apps/beagle/3.1.2
$ sudo mkdir -p /export/apps/beagle/3.1.2
$ sudo chown aorth /export/apps/beagle/3.1.2
$ make install
$ sudo chown -R root:root /export/apps/beagle/3.1.2</code>

**Note (2021-06-21):** Re-compiled on compute06 with support for NVIDIA GPU compute capability 7.0, but still seems to run on other nodes without modification.