Differences

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--- beagle-software [2016/11/14 11:59] – joguya
+++ beagle-software [2021/06/21 07:52] (current) – aorth
@@ Line 1: / Line 1: @@
 ====== Beagle ======
 BEAGLE is a high-performance library that can perform the core calculations at the heart of most Bayesian and Maximum Likelihood phylogenetics packages such as BEAST.
 ===== Information =====
-  * Latest Version: 2.1.2
+  * Latest Version: 3.1.2
   * Added: August, 2015
-  * Updated: November, 2016
+  * Updated: June, 2021
   * Link: https://github.com/beagle-dev/beagle-lib
@@ Line 13: / Line 12: @@
 See which versions of beagle are available:
-<code>$ module avail beagle
+<code>$ module avail beagle</code>
-</code>
-Load beagle
+Load one version into your environment:
-<code>$ module load beagle/2.1.2</code>
+<code>$ module load beagle/3.1.2</code>
-===== Installation ======
+Beagle is not useful by itself, but you can use it to speed up [[https://hpc.ilri.cgiar.org/beast-software|BEAST]] and [[https://hpc.ilri.cgiar.org/beast2-software|BEAST2]].
+===== Installation ======
 Notes from the sysadmin during installation:
-<code>
+<code>$ git clone https://github.com/beagle-dev/beagle-lib.git -b v3.1.2
-$ cd /tmp
+$ cd beagle-lib
-$ git clone --depth=1 https://github.com/beagle-dev/beagle-lib.git
+$ sed -i 's/compute_30/compute_70/' configure.ac
-$ cd beagle-lib/
+$ scl enable devtoolset-7 bash
-$ git checkout beagle_release_2_1_2
+$ sudo yum install libtool
-$ scl enable devtoolset-2 bash
+$ ./autogen.sh
-$ module load java/1.8
+$ ./configure --prefix=/export/apps/beagle/3.1.2
-$ ./autogen.sh
+$ sudo mkdir -p /export/apps/beagle/3.1.2
-$ sudo mkdir /export/apps/beagle/2.1.2/
+$ sudo chown aorth /export/apps/beagle/3.1.2
-$ sudo chown joguya:joguya /export/apps/beagle/2.1.2/
-$ ./configure --prefix=/export/apps/beagle/2.1.2/
 $ make install
-$ sudo chown -R root:root /export/apps/beagle/2.1.2/
+$ sudo chown -R root:root /export/apps/beagle/3.1.2</code>
-</code>
+**Note (2021-06-21):** Re-compiled on compute06 with support for NVIDIA GPU compute capability 7.0, but still seems to run on other nodes without modification.