beagle-software
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| beagle-software [2015/08/03 13:08] – created aorth | beagle-software [2021/06/21 07:52] (current) – aorth | ||
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| - | ====== | + | ====== |
| BEAGLE is a high-performance library that can perform the core calculations at the heart of most Bayesian and Maximum Likelihood phylogenetics packages such as BEAST. | BEAGLE is a high-performance library that can perform the core calculations at the heart of most Bayesian and Maximum Likelihood phylogenetics packages such as BEAST. | ||
| ===== Information ===== | ===== Information ===== | ||
| - | * Version: | + | * Latest |
| * Added: August, 2015 | * Added: August, 2015 | ||
| + | * Updated: June, 2021 | ||
| * Link: https:// | * Link: https:// | ||
| + | | ||
| ===== Usage ===== | ===== Usage ===== | ||
| - | === See versions of beagle | + | See which versions of beagle are available: |
| < | < | ||
| - | To use with BEAST, make sure beagle is loaded first! | + | Load one version into your environment: |
| + | < | ||
| + | |||
| + | Beagle | ||
| ===== Installation ====== | ===== Installation ====== | ||
| Notes from the sysadmin during installation: | Notes from the sysadmin during installation: | ||
| - | < | + | < |
| - | $ git clone https:// | + | |
| $ cd beagle-lib | $ cd beagle-lib | ||
| - | $ scl enable devtoolset-2 bash | + | $ sed -i ' |
| + | $ scl enable devtoolset-7 bash | ||
| + | $ sudo yum install libtool | ||
| $ ./ | $ ./ | ||
| - | $ ./configure --prefix=/ | + | $ ./configure --prefix=/ |
| - | $ sudo mkdir -p / | + | $ sudo mkdir -p / |
| - | $ sudo chown aorth / | + | $ sudo chown aorth / |
| $ make install | $ make install | ||
| - | $ sudo chown -R root:root / | + | $ sudo chown -R root:root / |
| - | $ exit</ | + | |
| + | **Note (2021-06-21): | ||
beagle-software.1438607313.txt.gz · Last modified: by aorth