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beagle-software [2016/11/14 11:59] – joguyabeagle-software [2021/06/21 07:51] – aorth
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 ====== Beagle ====== ====== Beagle ======
- 
 BEAGLE is a high-performance library that can perform the core calculations at the heart of most Bayesian and Maximum Likelihood phylogenetics packages such as BEAST. BEAGLE is a high-performance library that can perform the core calculations at the heart of most Bayesian and Maximum Likelihood phylogenetics packages such as BEAST.
  
 ===== Information ===== ===== Information =====
  
-  * Latest Version: 2.1.2+  * Latest Version: 3.1.2
   * Added: August, 2015   * Added: August, 2015
-  * Updated: November, 2016+  * Updated: June, 2021
   * Link: https://github.com/beagle-dev/beagle-lib   * Link: https://github.com/beagle-dev/beagle-lib
      
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 See which versions of beagle are available: See which versions of beagle are available:
-<code>$ module avail beagle +<code>$ module avail beagle</code>
-</code>+
  
-Load beagle +Load one version into your environment: 
-<code>$ module load beagle/2.1.2</code>+<code>$ module load beagle/3.1.2</code>
  
-===== Installation ======+Beagle is not useful by itself, but you can use it to speed up [[https://hpc.ilri.cgiar.org/beast-software|BEAST]].
  
 +===== Installation ======
 Notes from the sysadmin during installation: Notes from the sysadmin during installation:
  
-<code> +<code>$ git clone https://github.com/beagle-dev/beagle-lib.git -b v3.1.2 
-$ cd /tmp +$ cd beagle-lib 
-$ git clone --depth=1 https://github.com/beagle-dev/beagle-lib.git +$ sed -i 's/compute_30/compute_70/' configure.ac 
-$ cd beagle-lib/ +$ scl enable devtoolset-7 bash 
-$ git checkout beagle_release_2_1_2 +$ sudo yum install libtool 
-$ scl enable devtoolset-2 bash +$ ./autogen.sh 
-$ module load java/1.8 +$ ./configure --prefix=/export/apps/beagle/3.1.2 
-$ ./autogen.sh  +$ sudo mkdir -p /export/apps/beagle/3.1.2 
-$ sudo mkdir /export/apps/beagle/2.1.2/ +$ sudo chown aorth /export/apps/beagle/3.1.2
-$ sudo chown joguya:joguya /export/apps/beagle/2.1.2/ +
-$ ./configure --prefix=/export/apps/beagle/2.1.2/+
 $ make install $ make install
-$ sudo chown -R root:root /export/apps/beagle/2.1.2/ +$ sudo chown -R root:root /export/apps/beagle/3.1.2</code> 
-</code>+ 
 +**Note (2021-06-21):** Re-compiled on compute06 with support for NVIDIA GPU compute capability 7.0, but still seems to run on other nodes without modification.
beagle-software.txt · Last modified: 2021/06/21 07:52 by aorth