beagle-software
Differences
This shows you the differences between two versions of the page.
Both sides previous revisionPrevious revisionNext revision | Previous revisionNext revisionBoth sides next revision | ||
beagle-software [2016/11/14 11:59] – joguya | beagle-software [2021/06/21 07:09] – aorth | ||
---|---|---|---|
Line 1: | Line 1: | ||
====== Beagle ====== | ====== Beagle ====== | ||
- | |||
BEAGLE is a high-performance library that can perform the core calculations at the heart of most Bayesian and Maximum Likelihood phylogenetics packages such as BEAST. | BEAGLE is a high-performance library that can perform the core calculations at the heart of most Bayesian and Maximum Likelihood phylogenetics packages such as BEAST. | ||
===== Information ===== | ===== Information ===== | ||
- | * Latest Version: | + | * Latest Version: |
* Added: August, 2015 | * Added: August, 2015 | ||
- | * Updated: | + | * Updated: |
* Link: https:// | * Link: https:// | ||
| | ||
Line 13: | Line 12: | ||
See which versions of beagle are available: | See which versions of beagle are available: | ||
- | < | + | < |
- | </ | + | |
- | Load beagle | + | Load one version into your environment: |
- | < | + | < |
+ | |||
+ | Beagle is not useful by itself, but you can use it to speed up [[https:// | ||
===== Installation ====== | ===== Installation ====== | ||
- | |||
Notes from the sysadmin during installation: | Notes from the sysadmin during installation: | ||
- | < | + | < |
- | $ cd /tmp | + | $ sudo yum install libtool |
- | $ git clone --depth=1 | + | $ wget https:// |
- | $ cd beagle-lib/ | + | $ tar xf v3.1.2.tar.gz |
- | $ git checkout beagle_release_2_1_2 | + | $ cd beagle-lib-3.1.2 |
- | $ scl enable devtoolset-2 bash | + | $ scl enable devtoolset-7 bash |
- | $ module load java/1.8 | + | $ ./ |
- | $ ./ | + | $ ./configure --prefix=/ |
- | $ sudo mkdir / | + | $ sudo mkdir -p / |
- | $ sudo chown joguya: | + | $ sudo chown aorth / |
- | $ ./configure --prefix=/ | + | |
$ make install | $ make install | ||
- | $ sudo chown -R root:root / | + | $ sudo chown -R root:root / |
- | </ | + |
beagle-software.txt · Last modified: 2021/06/21 07:52 by aorth