beagle-software
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beagle-software [2015/08/03 13:08] – created aorth | beagle-software [2021/06/21 07:52] (current) – aorth | ||
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BEAGLE is a high-performance library that can perform the core calculations at the heart of most Bayesian and Maximum Likelihood phylogenetics packages such as BEAST. | BEAGLE is a high-performance library that can perform the core calculations at the heart of most Bayesian and Maximum Likelihood phylogenetics packages such as BEAST. | ||
===== Information ===== | ===== Information ===== | ||
- | * Version: | + | * Latest |
* Added: August, 2015 | * Added: August, 2015 | ||
+ | * Updated: June, 2021 | ||
* Link: https:// | * Link: https:// | ||
+ | | ||
===== Usage ===== | ===== Usage ===== | ||
- | === See versions of beagle | + | See which versions of beagle are available: |
< | < | ||
- | To use with BEAST, make sure beagle is loaded first! | + | Load one version into your environment: |
+ | < | ||
+ | |||
+ | Beagle | ||
===== Installation ====== | ===== Installation ====== | ||
Notes from the sysadmin during installation: | Notes from the sysadmin during installation: | ||
- | < | + | < |
- | $ git clone https:// | + | |
$ cd beagle-lib | $ cd beagle-lib | ||
- | $ scl enable devtoolset-2 bash | + | $ sed -i ' |
+ | $ scl enable devtoolset-7 bash | ||
+ | $ sudo yum install libtool | ||
$ ./ | $ ./ | ||
- | $ ./configure --prefix=/ | + | $ ./configure --prefix=/ |
- | $ sudo mkdir -p / | + | $ sudo mkdir -p / |
- | $ sudo chown aorth / | + | $ sudo chown aorth / |
$ make install | $ make install | ||
- | $ sudo chown -R root:root / | + | $ sudo chown -R root:root / |
- | $ exit</ | + | |
+ | **Note (2021-06-21): |
beagle-software.txt · Last modified: 2021/06/21 07:52 by aorth