Differences

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--- beagle-software [2015/08/03 13:08] – created aorth
+++ beagle-software [2021/06/21 07:09] – aorth
@@ Line 1: / Line 1: @@
-====== beagle ======
+====== Beagle ======
 BEAGLE is a high-performance library that can perform the core calculations at the heart of most Bayesian and Maximum Likelihood phylogenetics packages such as BEAST.
 ===== Information =====
-  * Version: git-c455af1f
+  * Latest Version: 3.1.2
   * Added: August, 2015
+  * Updated: September, 2019
   * Link: https://github.com/beagle-dev/beagle-lib
 ===== Usage =====
-=== See versions of beagle which are available ===
+See which versions of beagle are available:
 <code>$ module avail beagle</code>
-To use with BEAST, make sure beagle is loaded first!
+Load one version into your environment:
+<code>$ module load beagle/3.1.2</code>
+Beagle is not useful by itself, but you can use it to speed up [[https://hpc.ilri.cgiar.org/beast-software|BEAST]].
 ===== Installation ======
@@ Line 19: / Line 23: @@
 <code>$ cd /tmp
-$ git clone https://github.com/beagle-dev/beagle-lib.git
+$ sudo yum install libtool
-$ cd beagle-lib
+$ wget https://github.com/beagle-dev/beagle-lib/archive/v3.1.2.tar.gz
-$ scl enable devtoolset-2 bash
+$ tar xf v3.1.2.tar.gz
+$ cd beagle-lib-3.1.2
+$ scl enable devtoolset-7 bash
 $ ./autogen.sh
-$ ./configure --prefix=/export/apps/beagle/git-c455af1f
+$ ./configure --prefix=/export/apps/beagle/3.1.2
-$ sudo mkdir -p /export/apps/beagle/git-c455af1f
+$ sudo mkdir -p /export/apps/beagle/3.1.2
-$ sudo chown aorth /export/apps/beagle/git-c455af1f
+$ sudo chown aorth /export/apps/beagle/3.1.2
 $ make install
-$ sudo chown -R root:root /export/apps/beagle/git-c455af1f
+$ sudo chown -R root:root /export/apps/beagle/3.1.2</code>
-$ exit</code>