Differences

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--- beagle-software [2015/08/03 13:08] – created aorth
+++ beagle-software [2016/11/14 11:59] – joguya
@@ Line 1: / Line 1: @@
-====== beagle ======
+====== Beagle ======
 BEAGLE is a high-performance library that can perform the core calculations at the heart of most Bayesian and Maximum Likelihood phylogenetics packages such as BEAST.
 ===== Information =====
-  * Version: git-c455af1f
+  * Latest Version: 2.1.2
   * Added: August, 2015
+  * Updated: November, 2016
   * Link: https://github.com/beagle-dev/beagle-lib
 ===== Usage =====
-=== See versions of beagle which are available ===
+See which versions of beagle are available:
-<code>$ module avail beagle</code>
+<code>$ module avail beagle
+</code>
-To use with BEAST, make sure beagle is loaded first!
+Load beagle
+<code>$ module load beagle/2.1.2</code>
 ===== Installation ======
 Notes from the sysadmin during installation:
-<code>$ cd /tmp
+<code>
-$ git clone https://github.com/beagle-dev/beagle-lib.git
+$ cd /tmp
-$ cd beagle-lib
+$ git clone --depth=1 https://github.com/beagle-dev/beagle-lib.git
+$ cd beagle-lib/
+$ git checkout beagle_release_2_1_2
 $ scl enable devtoolset-2 bash
-$ ./autogen.sh
+$ module load java/1.8
-$ ./configure --prefix=/export/apps/beagle/git-c455af1f
+$ ./autogen.sh
-$ sudo mkdir -p /export/apps/beagle/git-c455af1f
+$ sudo mkdir /export/apps/beagle/2.1.2/
-$ sudo chown aorth /export/apps/beagle/git-c455af1f
+$ sudo chown joguya:joguya /export/apps/beagle/2.1.2/
+$ ./configure --prefix=/export/apps/beagle/2.1.2/
 $ make install
-$ sudo chown -R root:root /export/apps/beagle/git-c455af1f
+$ sudo chown -R root:root /export/apps/beagle/2.1.2/
-$ exit</code>
+</code>