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bcftools-software [2016/03/29 12:31]
joguya
bcftools-software [2018/06/01 19:17] (current)
aorth
Line 4: Line 4:
 ===== Information ===== ===== Information =====
  
-  * Latest Version: 1.3+  * Latest Version: 1.8
   * Added: September, 2015   * Added: September, 2015
-  * Updated: March2016+  * Updated: June2018
   * Link: https://samtools.github.io/bcftools   * Link: https://samtools.github.io/bcftools
  
 ===== Usage ===== ===== Usage =====
  
-=== See versions of bcftools which are available ===+See versions of bcftools which are available:
 <code>$ module avail bcftools</code> <code>$ module avail bcftools</code>
 +
 +Load one version into your environment:
 +<code>$ module load bcftools/1.8</code>
  
 ===== Installation ====== ===== Installation ======
Line 18: Line 21:
  
 <code>$ cd /tmp <code>$ cd /tmp
-$ wget https://github.com/samtools/bcftools/releases/download/1.2/bcftools-1.2.tar.bz2 +$ wget https://github.com/samtools/bcftools/releases/download/1.8/bcftools-1.8.tar.bz2 
-$ tar xf bcftools-1.2.tar.bz2 +$ tar xf bcftools-1.8.tar.bz2 
-$ cd bcftools-1.2 +$ cd bcftools-1.8 
-scl enable devtoolset-3 bash+./configure --prefix=/export/apps/bcftools/1.8 --with-htslib=/export/apps/htslib/1.8
 $ make $ make
-$ sudo mkdir -p /export/apps/bcftools/1.2 +$ sudo mkdir /export/apps/bcftools/1.8 
-$ sudo chown aorth /export/apps/bcftools/1.2 +$ sudo chown -R aorth:aorth /export/apps/bcftools/1.8 
-$ make prefix=/export/apps/bcftools/1.2 install +$ make install 
-$ sudo chown -R root:root /export/apps/bcftools/1.2</code>+$ sudo chown -R root:root /export/apps/bcftools/1.8</code> 
 + 
 +This links bcftools against a system-wide installation of htslib/1.8.
bcftools-software.1459254676.txt.gz · Last modified: 2016/03/29 12:31 by joguya