Differences

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--- bcftools-software [2015/09/13 08:22] – created aorth
+++ bcftools-software [2023/02/20 12:55] (current) – aorth
@@ Line 4: / Line 4: @@
 ===== Information =====
-  * Version: 1.2
+  * Latest Version: 1.15.1
   * Added: September, 2015
+  * Updated: February, 2023
   * Link: https://samtools.github.io/bcftools
 ===== Usage =====
-=== See versions of bcftools which are available ===
+See versions of bcftools which are available:
 <code>$ module avail bcftools</code>
+Load one version into your environment and run it:
+<code>$ module load bcftools/1.15.1
+$ bcftools</code>
 ===== Installation ======
 Notes from the sysadmin during installation:
-<code>$ cd /tmp
+<code>$ cd /tmp/
-$ wget https://github.com/samtools/bcftools/releases/download/1.2/bcftools-1.2.tar.bz2
+$ wget https://github.com/samtools/bcftools/releases/download/1.15.1/bcftools-1.15.1.tar.bz2
-$ tar xf bcftools-1.2.tar.bz2
+$ cd bcftools-1.15.1
-$ cd bcftools-1.2
+$ ./configure --enable-plugins --enable-libcurl --prefix=/export/apps/bcftools/1.15.1 --with-htslib=/export/apps/htslib/1.15.1
-$ scl enable devtoolset-3 bash
 $ make
-$ sudo mkdir -p /export/apps/bcftools/1.2
+$ sudo mkdir -p /export/apps/bcftools/1.15.1
-$ sudo chown aorth /export/apps/bcftools/1.2
+$ sudo chown aorth:aorth /export/apps/bcftools/1.15.1
-$ make prefix=/export/apps/bcftools/1.2 install
+$ make install
-$ sudo chown -R root:root /export/apps/bcftools/1.2</code>
+$ sudo chown -R root:root /export/apps/bcftools/1.15.1</code>
+This links bcftools against a system-wide installation of htslib/1.15.1.