Differences

This shows you the differences between two versions of the page.

--- bcftools-software [2017/02/05 11:41] – [Information] joguya
+++ bcftools-software [2025/12/05 07:28] (current) – aorth
@@ Line 4: / Line 4: @@
 ===== Information =====
-  * Latest Version: 1.3.1
+  * Latest Version: 1.22
   * Added: September, 2015
-  * Updated: February, 2017
+  * Updated: December, 2025
   * Link: https://samtools.github.io/bcftools
 ===== Usage =====
-=== See versions of bcftools which are available ===
+See versions of bcftools which are available:
 <code>$ module avail bcftools</code>
+Load one version into your environment and run it:
+<code>$ module load bcftools/1.22
+$ bcftools</code>
 ===== Installation ======
 Notes from the sysadmin during installation:
-<code>$ cd /tmp
+<code>$ cd /tmp/
-$ wget https://github.com/samtools/bcftools/releases/download/1.2/bcftools-1.2.tar.bz2
+$ wget https://github.com/samtools/bcftools/releases/download/1.22/bcftools-1.22.tar.bz2
-$ tar xf bcftools-1.2.tar.bz2
+$ cd bcftools-1.22
-$ cd bcftools-1.2
+$ ./configure --enable-plugins --enable-libcurl --prefix=/export/apps/bcftools/1.22 --with-htslib=/export/apps/htslib/1.22.1
-$ scl enable devtoolset-3 bash
 $ make
-$ sudo mkdir -p /export/apps/bcftools/1.2
+$ sudo mkdir -p /export/apps/bcftools/1.22
-$ sudo chown aorth /export/apps/bcftools/1.2
+$ sudo chown aorth:aorth /export/apps/bcftools/1.22
-$ make prefix=/export/apps/bcftools/1.2 install
+$ make install
-$ sudo chown -R root:root /export/apps/bcftools/1.2</code>
+$ sudo chown -R root:root /export/apps/bcftools/1.22</code>
+This links bcftools against a system-wide installation of htslib/1.22.