bcftools-software
Differences
This shows you the differences between two versions of the page.
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bcftools-software [2015/09/13 08:22] – created aorth | bcftools-software [2021/09/05 10:51] – aorth | ||
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===== Information ===== | ===== Information ===== | ||
- | * Version: 1.2 | + | * Latest |
* Added: September, 2015 | * Added: September, 2015 | ||
+ | * Updated: September, 2021 | ||
* Link: https:// | * Link: https:// | ||
===== Usage ===== | ===== Usage ===== | ||
- | === See versions of bcftools which are available | + | See versions of bcftools which are available: |
< | < | ||
+ | |||
+ | Load one version into your environment and run it: | ||
+ | < | ||
+ | $ bcftools</ | ||
===== Installation ====== | ===== Installation ====== | ||
Line 17: | Line 22: | ||
< | < | ||
- | $ wget https:// | + | $ wget https:// |
- | $ tar xf bcftools-1.2.tar.bz2 | + | $ tar xf bcftools-1.13.tar.bz2 |
- | $ cd bcftools-1.2 | + | $ cd bcftools-1.13 |
- | $ scl enable devtoolset-3 bash | + | # install a newer compiler from Red Hat software collections |
+ | $ sudo yum install devtoolset-7-gcc devtoolset-7-gcc-gfortran devtoolset-7-libquadmath-devel devtoolset-7-gcc-c++ | ||
+ | $ scl enable devtoolset-7 bash | ||
+ | $ ./configure --enable-plugins --enable-libcurl --prefix=/ | ||
$ make | $ make | ||
- | $ sudo mkdir -p / | + | $ sudo mkdir -p / |
- | $ sudo chown aorth / | + | $ sudo chown aorth / |
- | $ make prefix=/ | + | $ make install |
- | $ sudo chown -R root:root / | + | sudo chown -R root:root / |
+ | |||
+ | This links bcftools against a system-wide installation of htslib/ |
bcftools-software.txt · Last modified: 2023/02/20 12:55 by aorth