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bbmap-software [2020/04/23 10:34]
aorth
bbmap-software [2022/02/22 13:34] (current)
aorth [Information]
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 ===== Information ===== ===== Information =====
  
-  * Version: 38.67+  * Version: 38.95
   * Added: September, 2019   * Added: September, 2019
-  * Link: https://jgi.doe.gov/data-and-tools/bbtools/bb-tools-user-guide/bbmap-guide +  * Updated: February, 2022 
 +  * Link: https://sourceforge.net/projects/bbmap/
 ===== Usage ===== ===== Usage =====
  
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 Load one version into your environment and run it: Load one version into your environment and run it:
-<code>$ module load bbmap/38.67+<code>$ module load bbmap/38.95
 $ bbmap.sh</code> $ bbmap.sh</code>
  
-**Note:** BBMap is multithreaded for both indexing and mapping. It will use all available threads on the host unless capped with the ''t='' flag. Please set this to a number that matches the number of CPUs you requested in your SLURM allocation. See [[https://jgi.doe.gov/data-and-tools/bbtools/bb-tools-user-guide/bbmap-guide/|the documentation]] for more information.+**Note:** BBMap is multithreaded for both indexing and mapping. It will use all available threads on the host unless capped with the ''t='' flag. Please set this to a number that matches the number of CPUs you requested in your SLURM allocation. See ''bbmap.sh -h'' for more information.
  
 ===== Installation ====== ===== Installation ======
 Notes from the sysadmin during installation: Notes from the sysadmin during installation:
  
-<code>$ cd /tmp/ +<code>$ cd /tmp 
-$ wget 'https://downloads.sourceforge.net/project/bbmap/BBMap_38.67.tar.gz?r=https%3A%2F%2Fsourceforge.net%2Fprojects%2Fbbmap%2Ffiles%2Flatest%2Fdownload&ts=1568205639' -O BBMap_38.67.tar.gz +$ tar xf BBMap_38.95.tar.gz 
-$ tar xf BBMap_38.67.tar.gz +$ wget https://liquidtelecom.dl.sourceforge.net/project/bbmap/BBMap_38.95.tar.gz 
-$ sudo mkdir -p /export/apps/bbmap/38.67 +$ sudo mkdir -p /export/apps/bbmap/38.95 
-$ sudo cp -r bbmap/* /export/apps/bbmap/38.67</code>+$ sudo cp -r bbmap/* /export/apps/bbmap/38.95</code>
bbmap-software.1587638058.txt.gz · Last modified: 2020/04/23 10:34 by aorth