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bbmap-software [2019/09/11 12:59]
aorth created
bbmap-software [2020/04/23 10:34] (current)
aorth
Line 16: Line 16:
 <code>$ module load bbmap/38.67 <code>$ module load bbmap/38.67
 $ bbmap.sh</code> $ bbmap.sh</code>
 +
 +**Note:** BBMap is multithreaded for both indexing and mapping. It will use all available threads on the host unless capped with the ''t='' flag. Please set this to a number that matches the number of CPUs you requested in your SLURM allocation. See [[https://jgi.doe.gov/data-and-tools/bbtools/bb-tools-user-guide/bbmap-guide/|the documentation]] for more information.
  
 ===== Installation ====== ===== Installation ======
bbmap-software.1568206799.txt.gz · Last modified: 2019/09/11 12:59 by aorth