bbmap-software
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| Next revision | Previous revision | ||
| bbmap-software [2019/09/11 12:59] – created aorth | bbmap-software [2022/02/22 13:34] (current) – [Information] aorth | ||
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| ===== Information ===== | ===== Information ===== | ||
| - | * Version: 38.67 | + | * Version: 38.95 |
| * Added: September, 2019 | * Added: September, 2019 | ||
| - | * Link: https://jgi.doe.gov/data-and-tools/bbtools/bb-tools-user-guide/ | + | |
| + | | ||
| ===== Usage ===== | ===== Usage ===== | ||
| Line 14: | Line 14: | ||
| Load one version into your environment and run it: | Load one version into your environment and run it: | ||
| - | < | + | < |
| $ bbmap.sh</ | $ bbmap.sh</ | ||
| + | |||
| + | **Note:** BBMap is multithreaded for both indexing and mapping. It will use all available threads on the host unless capped with the '' | ||
| ===== Installation ====== | ===== Installation ====== | ||
| Notes from the sysadmin during installation: | Notes from the sysadmin during installation: | ||
| - | < | + | < |
| - | $ wget 'https://downloads.sourceforge.net/ | + | $ tar xf BBMap_38.95.tar.gz |
| - | $ tar xf BBMap_38.67.tar.gz | + | $ wget https://liquidtelecom.dl.sourceforge.net/ |
| - | $ sudo mkdir -p / | + | $ sudo mkdir -p / |
| - | $ sudo cp -r bbmap/* / | + | $ sudo cp -r bbmap/* / |
bbmap-software.1568206799.txt.gz · Last modified: 2019/09/11 12:59 by aorth