Differences

This shows you the differences between two versions of the page.

--- bbmap-software [2020/04/23 10:34] – aorth
+++ bbmap-software [2022/02/22 13:33] – aorth
@@ Line 4: / Line 4: @@
 ===== Information =====
-  * Version: 38.67
+  * Version: 38.95
   * Added: September, 2019
+  * Updated: February, 2022
   * Link: https://jgi.doe.gov/data-and-tools/bbtools/bb-tools-user-guide/bbmap-guide
@@ Line 14: / Line 15: @@
 Load one version into your environment and run it:
-<code>$ module load bbmap/38.67
+<code>$ module load bbmap/38.95
 $ bbmap.sh</code>
-**Note:** BBMap is multithreaded for both indexing and mapping. It will use all available threads on the host unless capped with the ''t='' flag. Please set this to a number that matches the number of CPUs you requested in your SLURM allocation. See [[https://jgi.doe.gov/data-and-tools/bbtools/bb-tools-user-guide/bbmap-guide/|the documentation]] for more information.
+**Note:** BBMap is multithreaded for both indexing and mapping. It will use all available threads on the host unless capped with the ''t='' flag. Please set this to a number that matches the number of CPUs you requested in your SLURM allocation. See ''bbmap.sh -h'' for more information.
 ===== Installation ======
 Notes from the sysadmin during installation:
-<code>$ cd /tmp/
+<code>$ cd /tmp
-$ wget 'https://downloads.sourceforge.net/project/bbmap/BBMap_38.67.tar.gz?r=https%3A%2F%2Fsourceforge.net%2Fprojects%2Fbbmap%2Ffiles%2Flatest%2Fdownload&ts=1568205639' -O BBMap_38.67.tar.gz
+$ tar xf BBMap_38.95.tar.gz
-$ tar xf BBMap_38.67.tar.gz
+$ wget https://liquidtelecom.dl.sourceforge.net/project/bbmap/BBMap_38.95.tar.gz
-$ sudo mkdir -p /export/apps/bbmap/38.67
+$ sudo mkdir -p /export/apps/bbmap/38.95
-$ sudo cp -r bbmap/* /export/apps/bbmap/38.67</code>
+$ sudo cp -r bbmap/* /export/apps/bbmap/38.95</code>