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artic-software [2023/02/23 12:18] – created aorthartic-software [2023/02/24 03:46] (current) – aorth
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 $ python3 -m venv /export/apps/artic/1.2.3 $ python3 -m venv /export/apps/artic/1.2.3
 $ source /export/apps/artic/1.2.3/bin/activate $ source /export/apps/artic/1.2.3/bin/activate
-$ pip install biopython==1.79 clint==0.5.1 medaka==1.6.1 multiqc==1.13 pandas==1.4.4 tqdm==4.64.1+$ pip install biopython==1.79 clint==0.5.1 medaka==1.7.3 multiqc==1.13 pandas==1.4.4 tqdm==4.64.1
 $ python setup.py install $ python setup.py install
 $ sudo chown -R root:root /export/apps/artic/1.2.3</code> $ sudo chown -R root:root /export/apps/artic/1.2.3</code>
 +
 +Run the test datasets:
 +
 +<code>$ ./test-runner.sh nanopolish
 +$ ./test-runner.sh medaka</code>
artic-software.1677154728.txt.gz · Last modified: 2023/02/23 12:18 by aorth