Differences

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--- amber-software [2015/11/23 08:04] – created joguya
+++ amber-software [2015/11/23 08:52] (current) – joguya
@@ Line 1: / Line 1: @@
-====== Amber Suite ======
+====== Amber Software Suite ======
-Amber suite consists of Amber & Amber Tools. AmberTools consists of several independently developed packages that work well by themselves, and with Amber itself. The suite can also be used to carry out complete molecular dynamics simulations, with either explicit water or generalized Born solvent models.
+Amber Software suite consists of Amber & Amber Tools. AmberTools consists of several independently developed packages that work well by themselves, and with Amber itself. The suite can also be used to carry out complete molecular dynamics simulations, with either explicit water or generalized Born solvent models.
 ===== Information =====
@@ Line 12: / Line 12: @@
 See which versions of amber & ambertools are available:
 <code>$ module avail amber
-$ module avail ambertools
 </code>
-Load amber suite—includes Amber 12 and Amber Tools 13:
+Load amber suite—includes both Amber 12 and Amber Tools 13:
 <code>$ module load amber/12</code>
@@ Line 30: / Line 29: @@
 $ module load python/2.7.8 openmpi/1.8.2
 $ export AMBERHOME=`pwd`
-$ ./configure -mpi gnu
+$ ./configure gnu
 $ DO_PARALLEL='mpirun -np 3' make test
 $ make -j 4 install
 $ cp -r . /export/apps/amber/12/
+$ sudo chown -R root:root /export/apps/amber/12
 </code>