ILRI Research Computing

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====== AliView ======
AliView is yet another alignment viewer and editor, but this is probably one of the fastest and most intuitive to use, not so bloated and hopefully to your liking.

===== Information =====

  * Version: 1.17.1
  * Added: August, 2015
  * Link: http://www.ormbunkar.se/aliview/

===== Usage =====

See versions of aliview which are available:
<code>$ module avail aliview</code>

===== Installation ======
Notes from the sysadmin during installation:

<code>$ sudo mkdir -p /export/apps/aliview/1.17.1
$ wget http://www.ormbunkar.se/aliview/downloads/linux/linux-version-1.17.1/aliview/aliview.jar
$ wget http://www.ormbunkar.se/aliview/downloads/linux/linux-version-1.17.1/aliview/aliview
$ sudo cp aliview* /export/apps/aliview/1.17.1
$ sudo chmod +x /export/apps/aliview/1.17.1/aliview</code>