ILRI Research Computing

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====== ADMIXTURE ======
ADMIXTURE is a software tool for maximum likelihood estimation of individual ancestries from multilocus SNP genotype datasets. It uses the same statistical model as STRUCTURE but calculates estimates much more rapidly using a fast numerical optimization algorithm.

===== Information =====

  * Version: 1.3.0
  * Added: January, 2016
  * Link: https://www.genetics.ucla.edu/software/admixture/index.html

===== Usage =====

See versions of admixture which are available:
<code>$ module avail admixture</code>

Load and run admixture:
<code>$ module load admixture/1.3.0
$ admixture</code>

===== Installation ======
Notes from the sysadmin during installation:

<code>$ cd /tmp
$ wget https://www.genetics.ucla.edu/software/admixture/binaries/admixture_linux-1.3.0.tar.gz
$ tar -xvf admixture_linux-1.3.0.tar.gz
$ sudo mkdir /export/apps/admixture/1.3.0/
$ cd admixture_linux-1.3.0/
$ sudo cp -r . /export/apps/admixture/1.3.0/
</code>