abyss-software
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abyss-software [2015/06/10 11:50] – [Installation] joguya | abyss-software [2019/07/10 14:25] (current) – aorth | ||
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===== Information ===== | ===== Information ===== | ||
- | * Version: 1.5.2 | + | * Version: |
* Added: August, 2013 | * Added: August, 2013 | ||
- | * Updated: | + | * Updated: |
- | * K-mer size: 64 (default at compile time) | + | * K-mer size: 128 (default at compile time) |
* Link: http:// | * Link: http:// | ||
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See versions of abyss which are available: | See versions of abyss which are available: | ||
< | < | ||
+ | |||
+ | Load one version into your environment and run it: | ||
+ | < | ||
+ | $ abyss-pe help</ | ||
===== Installation ====== | ===== Installation ====== | ||
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< | < | ||
- | $ wget https://github.com/bcgsc/ | + | $ wget http://www.bcgsc.ca/ |
- | $ tar -xvf abyss-1.9.0.tar.gz | + | $ tar xf abyss-2.1.4.tar.gz |
- | $ cd abyss-1.9.0 | + | $ cd abyss-2.1.4 |
- | $ scl enable devtoolset-2 bash | + | $ sudo yum install sparsehash-devel.x86_64 openmpi3-devel.x86_64 |
- | $ sudo mkdir / | + | $ export |
- | $ sudo chown joguya: | + | $ export LIBS='-Wl,-rpath -Wl,/usr/lib64/openmpi3/lib -Wl,--enable-new-dtags -L/usr/lib64/openmpi3/lib -lmpi' |
- | $ CC=clang ./ | + | $ ./configure |
$ make -j4 | $ make -j4 | ||
+ | $ sudo mkdir -p / | ||
+ | $ sudo chown aorth / | ||
$ make install | $ make install | ||
- | $ sudo chown -R root:root / | + | $ sudo chown -R root:root / |
- | </ | + | $ sudo yum remove sparsehash-devel.x86_64 openmpi3-devel.x86_64</ |
+ | |||
+ | There is currently a [[https:// |
abyss-software.1433937006.txt.gz · Last modified: 2015/06/10 11:50 by joguya