wtdbg2

Wtdbg2 is a de novo sequence assembler for long noisy reads produced by PacBio or Oxford Nanopore Technologies (ONT). It assembles raw reads without error correction and then builds the consensus from intermediate assembly output.

• Latest version: 2.4
• Added: July, 2019
• Link: https://github.com/ruanjue/wtdbg2

See versions which are available:

$ module avail wtdbg2

Load one version into your environment and run it:

$ module load wtdbg2/2.4
$ wtdbg2

Notes from the sysadmin during installation:

$ cd /tmp
$ wget https://github.com/ruanjue/wtdbg2/releases/download/v2.4/wtdbg-2.4_x64_linux.tar.gz
$ tar xf wtdbg-2.4_x64_linux.tar.gz
$ sudo mkdir -p /export/apps/wtdbg/2.4/bin
$ sudo cp wtdbg-2.4_x64_linux/* /export/apps/wtdbg/2.4/bin
$ sudo cp -r wtdbg-2.4_x64_linux/scripts/ /export/apps/wtdbg/2.4