w2rap-contigger

An Illumina PE genome contig assembler, can handle large (17Gbp) complex (hexaploid) genomes.

• Version: git-a43f5a05
• Added: September, 2017
• Link: http://bioinfologics.github.io/the-w2rap-contigger/

See versions of w2rap-contigger which are available:

$ module avail w2rap-contigger

Load one version into your environment and run it:

$ module load w2rap-contigger/git-a43f5a05
$ w2rap-contigger

Notes from the sysadmin during installation:

$ cd /tmp
$ scl enable devtoolset-4 bash
$ git clone https://github.com/gonzalogacc/w2rap-contigger.git
$ cd w2rap-contigger
$ cmake -D CMAKE_CXX_COMPILER=g++ .
$ make -j4
$ sudo mkdir -p /export/apps/w2rap-contigger/git-a43f5a05
$ sudo cp -r bin/ /export/apps/w2rap-contigger/git-a43f5a05