Velvet

Sequence assembler for very short reads.

• Version: 1.2.10
• Added: November, 2012
• Updated: May, 2025
• Link: https://github.com/dzerbino/velvet

See versions which are available:

$ module avail velvet

Load one version into your environment and run it:

$ module load velvet/1.2.10
$ velvetg

• https://wiki.hpcc.msu.edu/display/Bioinfo/Velvet+and+Oases

Notes from the sysadmin during installation:

$ wget https://github.com/dzerbino/velvet/archive/refs/tags/v1.2.10.tar.gz
$ tar xf v1.2.10.tar.gz 
$ cd velvet-1.2.10
$ make OPENMP=1
$ make cleanobj
$ sudo cp -r . /export/apps/velvet/1.2.10