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trimgalore

Trim Galore is a wrapper around Cutadapt and FastQC to consistently apply adapter and quality trimming to FastQ files, with extra functionality for RRBS data.

Information

Usage

See versions of trimgalore which are available:

$ module avail trimgalore

Load one version into your environment and run it:

$ module load trimgalore/0.6.7
$ trim_galore

Installation

Notes from the sysadmin during installation:

$ cd /tmp
$ wget https://github.com/FelixKrueger/TrimGalore/archive/refs/tags/0.6.7.tar.gz
$ tar xf 0.6.7.tar.gz
$ sudo cp -r TrimGalore-0.6.7 /export/apps/trimgalore/0.6.7