transabyss

De novo assembly of RNAseq data using ABySS.

• Version: 2.0.1
• Added: January, 2023
• Link: https://github.com/bcgsc/transabyss

See which versions are available:

$ module avail transabyss

Load one version into your environment and run it:

$ module load transabyss/2.0.1
$ transabyss

Notes from the sysadmin during installation:

$ cd /tmp
$ wget https://github.com/bcgsc/transabyss/releases/download/2.0.1/transabyss-2.0.1.zip
$ unzip transabyss-2.0.1.zip
$ sudo mkdir -p /export/apps/transabyss/2.0.1
$ sudo chown aorth /export/apps/transabyss/2.0.1
$ module load python/3.9
$ python -m venv /export/apps/transabyss/2.0.1/.venv
$ source /export/apps/transabyss/2.0.1/.venv/bin/activate
$ python -m pip install --upgrade pip setuptools wheel
$ python -m pip install python-igraph
$ cp -r . /export/apps/transabyss/2.0.1