Table of Contents

Tracer

Tracer is a program for analysing the trace files generated by Bayesian MCMC runs (that is, the continuous parameter values sampled from the chain). It can be used to analyse runs of BEAST, MrBayes, LAMARC and possibly other MCMC programs.

Information

Usage

See versions of tracer which are available

module avail tracer

Installation

Notes from the sysadmin during installation:

wget 'http://tree.bio.ed.ac.uk/download.php?id=88&num=3' -O Tracer1.6.tgz
tar zxf Tracer1.6.tgz
sudo mkdir /export/apps/tracer/1.6
sudo cp -rv Tracer_v1.6/* /export/apps/tracer/1.6
sudo chmod +x /export/apps/tracer/1.6/bin/tracer