Transcript assembly and quantification for RNA-Seq. A fork of the earlier tool of the same name by Johns Hopkins.
See versions which are available:
$ module avail stringtie2
Load one version into your environment and run it:
$ module load stringtie2/2.2.1 $ stringtie -h
Notes from the sysadmin during installation:
$ cd /tmp $ git clone https://github.com/gpertea/stringtie.git -b v2.2.1 $ make release $ sudo mkdir -p /export/apps/stringtie2/2.2.1/bin $ sudo cp stringtie /export/apps/stringtie2/2.2.1/bin