stringtie

StringTie is a fast and highly efficient assembler of RNA-Seq alignments into potential transcripts.

• Version: 1.3.4d
• Added: July, 2014
• Updated: June, 2018
• Link: https://ccb.jhu.edu/software/stringtie/

See versions of stringtie which are available:

$ module avail stringtie

Load the latest version into your environment and print help:

$ module load stringtie/1.3.4d
$ stringtie -h

Notes from the sysadmin during installation:

$ cd /tmp
$ wget http://ccb.jhu.edu/software/stringtie/dl/stringtie-1.3.4d.tar.gz
$ tar xf stringtie-1.3.4d.tar.gz
$ cd stringtie-1.3.4d
$ make release
$ sudo mkdir -p /export/apps/stringtie/1.3.4d/bin
$ sudo cp stringtie /export/apps/stringtie/1.3.4d/bin
$ sudo cp README LICENSE /export/apps/stringtie/1.3.4d