staramr

Scans genome contigs against the ResFinder, PlasmidFinder, and PointFinder databases.

• Version: 0.11.0
• Added: February, 2025
• Link: https://github.com/phac-nml/staramr

See versions that are available:

$ module avail staramr

Load one version into your environment and run it:

$ module load staramr/0.11.0
$ staramr db info

Notes from the sysadmin during installation.

$ module load python/3.10
$ sudo mkdir -p /export/apps/staramr/0.11.0
$ sudo chown aorth /export/apps/staramr/0.11.0
$ python3 -m venv /export/apps/staramr/0.11.0
$ source /export/apps/staramr/0.11.0/bin/activate
$ pip install -U pip setuptools wheel
$ pip install staramr==0.11.0
$ sudo chown -R root /export/apps/staramr/0.11.0