stacks

Stacks is a software pipeline for building loci from short-read sequences, such as those generated on the Illumina platform.

• Version: 2.62
• Added: February, 2015
• Updated: January, 2023
• Link: http://creskolab.uoregon.edu/stacks/manual

Show all available versions:

$ module avail stacks

Load one version into your environment and run it:

$ module load stacks/2.62
$ sstacks

Notes from the systems administrator during installation:

$ cd /tmp
$ wget http://catchenlab.life.illinois.edu/stacks/source/stacks-2.62.tar.gz
$ tar xf stacks-2.62.tar.gz
$ ./configure --prefix=/export/apps/stacks/2.62
$ make
$ sudo mkdir -p /export/apps/stacks/2.62
$ sudo chown aorth /export/apps/stacks/2.62
$ make install