srprism

Single Read Paired Read Indel Substitution Minimizer.

• Version: 3.1.2
• Added: March, 2022
• Link: https://github.com/ncbi/SRPRISM

See versions which are available:

$ module avail srprism

Load one version into your environment and run it:

$ module load srprism/3.1.2
$ srprism

Notes from the sysadmin during installation:

$ git clone https://github.com/ncbi/SRPRISM
$ cd SRPRISM/srprism
$ git checkout v3.1.2
$ export NGS_HOME=/export/apps/ngs-tools/3.0.0
$ export VDB_HOME=/export/apps/ncbi-vdb/3.0.0
$ make
$ sudo mkdir -p /export/apps/srprism/3.1.2/bin
$ sudo mkdir -p /export/apps/srprism/3.1.2/bin
$ sudo cp app/srprism /export/apps/srprism/3.1.2/bin

Requires ngs-tools and ncbi-vdb also (compiled separately into /export/apps).