SRA Toolkit

A collection of tools and libraries for using data in the INSDC Sequence Read Archives.

• Latest version: 2.10.0
• Added: August, 2014
• Updated: December, 2019
• Link: https://trace.ncbi.nlm.nih.gov/Traces/sra/sra.cgi?view=software

See versions of SRAToolkit which are available:

$ module avail sratoolkit

Load one version into your environment:

$ module load sratoolkit/2.10.0

Notes from the sysadmin during installation:

$ cd /tmp
$ wget http://ftp-trace.ncbi.nlm.nih.gov/sra/sdk/2.10.0/sratoolkit.2.10.0-centos_linux64.tar.gz
$ tar xf sratoolkit.2.10.0-centos_linux64.tar.gz
$ sudo mkdir -p /export/apps/sratoolkit/2.10.0
$ sudo cp -r sratoolkit.2.10.0-centos_linux64/* /export/apps/sratoolkit/2.10.0