SolexaQA++

SolexaQA calculates sequence quality statistics and creates visual representations of data quality for second-generation sequencing data.

• Version: 3.1.3
• Added: February, 2015
• Link: http://solexaqa.sourceforge.net/

• Show all available versions of SolexaQA++

  module avail SolexaQA++

• Load SolexaQA++ module:

  module load SolexaQA++/3.1.3

• download SolexaQA++ tarball - its already compiled but you can recompile it if you wish

  wget "http://downloads.sourceforge.net/project/solexaqa/src/SolexaQA%2B%2B_v3.1.3.zip?r=http%3A%2F%2Fsourceforge.net%2Fprojects%2Fsolexaqa%2Ffiles%2F&ts=1423563723&use_mirror=liquidtelecom" -O "SolexaQA++_v3.1.3.zip"
  unzip SolexaQA++_v3.1.3.zip
  cd SolexaQA++_v3.1.3
  chmod +x Linux_x64/SolexaQA++
  sudo mkdir -p /export/apps/SolexaQA++/3.1.3/
  sudo cp Linux_x64/SolexaQA++ /export/apps/SolexaQA++/3.1.3/

• SolexaQA++ module file

  #%Module1.0
  #####################################################################
  ##
  ## SolexaQA++ Modulefile
  ## By James Oguya, j.oguya@cgiar.org
  ## February, 2015
  ##
  
  set appname         SolexaQA++
  set version         3.1.3
  set prefix          /export/apps/${appname}/${version}
  set exec_prefix     ${prefix}
  set url "http://solexaqa.sourceforge.net/"
  set msg "SolexaQA calculates sequence quality statistics and creates visual representations of data quality for second-generation sequencing data.\SolexaQA++ Official Site: $url\n"
  
  module-whatis $msg
  
  proc ModulesHelp { } {
      puts stderr "$msg"
  }
  
  conflict        SolexaQA++
  
  prepend-path    PATH    ${exec_prefix}

• deploy the new module using ansible

  ansible-playbook site.yml -u provisioning -K -s --limit=compute --tags=modules