SOAPdenovo2

SOAPdenovo is a novel short-read assembly method that can build a de novo draft assembly for the human-sized genomes.

• Version: git-c4d2f5ee
• Added: October, 2014
• Updated: April, 2018
• Link: http://soap.genomics.org.cn/soapdenovo.html

See versions of SOAPdenovo2 which are available:

$ module avail SOAPdenovo2

Notes from the sysadmin during installation:

$ cd /tmp
$ git clone https://github.com/aquaskyline/SOAPdenovo2.git
$ cd SOAPdenovo2
$ make
$ sudo mkdir -p /export/apps/SOAPdenovo2/git-c4d2f5ee/bin
$ sudo cp SOAPdenovo-* /export/apps/SOAPdenovo2/git-c4d2f5ee/bin
$ sudo cp LICENSE VERSION /export/apps/SOAPdenovo2/git-c4d2f5ee