SnpEff is a variant annotation and effect prediction tool. It annotates and predicts the effects of variants on genes (such as amino acid changes).
SnpSift is a toolbox that allows you to filter and manipulate annotated files.
See which versions of are available:
$ module avail snpeff
Load one into your environment and run it:
$ module load snpeff/5.1 $ snpeff
Notes from the sysadmin during installation:
$ cd /tmp $ wget https://snpeff.blob.core.windows.net/versions/snpEff_latest_core.zip $ sudo mkdir -p /export/apps/snpeff/5.1 $ sudo cp -r snpEff/* /export/apps/snpeff/5.1