SIFT

SIFT predicts whether an amino acid substitution affects protein function.

• Version: 4.0.3b
• Added: February, 2017
• Link: http://sift.jcvi.org/

See which versions of sift are available:

$ module avail sift

Load sift/4.0.3b

$ module load sift/4.0.3b

Notes from the sysadmin during installation:

$ cd /tmp
$ wget -qO- http://sift.jcvi.org/www/sift4.0.3b.tar.gz | tar xvz
$ cd sift4.0.3b/
$ find bin/ -type f -iname '*.pl' -exec sed -i 's#^.*/perl.*#\#!/usr/bin/env perl#' {} \;
$ scl enable devtoolset-3 bash
$ module load perl/5.22.3
$ cpanm Tie::IxHash
$ sudo mkdir -p /export/apps/sift/4.0.3b/
$ sudo cp -rv . /export/apps/sift/4.0.3b/