sickle

sickle is a windowed adaptive trimming tool for FASTQ files using quality

• Version: 1.33
• Added: July, 2016
• Link: https://github.com/najoshi/sickle

See which versions of sickle are available:

$ module avail sickle

Load sickle

$ module load sickle/1.33

Notes from the sysadmin during installation:

$ cd /tmp/
$ wget https://github.com/najoshi/sickle/archive/v1.33.tar.gz
$ tar -xf v1.33.tar.gz
$ cd sickle-1.33/
$ scl enable devtoolset-2 bash
$ make
$ sudo mkdir -p /export/apps/sickle/1.33/
$ sudo cp sickle /export/apps/sickle/1.33/