De novo assembly from Oxford Nanopore reads.
See versions of shasta which are available:
$ module avail shasta
Load one version into your environment and run it:
$ module load shasta/0.4.0 $ shasta
Note: Please use the --threads option to limit the number of threads launched by shasta to be the same amount as in your SLURM sbatch allocation. See the shasta documentation for more information.
Notes from the sysadmin during installation:
$ cd /tmp $ sudo mkdir -p /export/apps/shasta/0.4.0/bin $ sudo wget https://github.com/chanzuckerberg/shasta/releases/download/0.4.0/shasta-Linux-0.4.0 -O /export/apps/shasta/0.4.0/bin/shasta $ sudo chmod +x /export/apps/shasta/0.4.0/bin/shasta