seqtk

Seqtk is a fast and lightweight tool for processing sequences in the FASTA or FASTQ format.

• Version: 1.3
• Added: February, 2018
• Updated: October, 2019
• Link: https://github.com/lh3/seqtk

See versions of seqtk which are available:

$ module avail seqtk

Load one version into your environment and run it:

$ module load seqtk/1.3
$ seqtk

Notes from the sysadmin during installation:

$ cd /tmp
$ wget https://github.com/lh3/seqtk/archive/v1.3.tar.gz
$ tar xf v1.3.tar.gz
$ cd seqtk-1.3
$ scl enable devtoolset-7 bash
$ make
$ sudo mkdir -p /export/apps/seqtk/1.3/bin
$ sudo cp seqtk /export/apps/seqtk/1.3/bin