Table of Contents

seqqs

seqqs

Seqqs (SEQuence Quality Statistics, pronounced "seeks") is a C library for quickly gathering quality statistics from sequence files.

Information

Version: git-3d053750
Added: March, 2015
Link: https://github.com/vsbuffalo/seqqs

Usage

See versions of seqqs which are available

$ module avail seqqs

Load a module and run seqqs

$ module load seqqs/git-3d053750
$ seqqs in.fq

Installation

Notes from the sysadmin during installation:

$ cd ~/src/git
$ git clone https://github.com/vsbuffalo/seqqs.git
$ cd seqqs
$ sed -i 's/CC = gcc/CC = clang/' Makefile
$ sudo mkdir -p /export/apps/seqqs/git-3d053750/bin
$ sudo cp pairs seqqs /export/apps/seqqs/git-3d053750/bin
$ sudo cp README.md /export/apps/seqqs/git-3d053750

Note: Developer uses clang, so let's also use it.