samclip

Filter SAM file for soft and hard clipped alignments.

• Version: 0.4.0
• Added: April, 2025
• Link: https://github.com/tseemann/samclip

See which versions are available:

$ module avail samclip

Load one version into your environment and run it:

$ module load samclip/0.4.0
$ samclip

Notes from the sysadmin during installation:

$ sudo mkdir -p /export/apps/samclip/0.4.0/bin
$ sudo wget https://raw.githubusercontent.com/tseemann/samclip/refs/tags/v0.4.0/samclip -O /export/apps/samclip/0.4.0/bin/samclip
$ sudo chmod +x /export/apps/samclip/0.4.0/bin/samclip